STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_1530KEGG: ngk:NGK_0308 restriction endonuclease R.NgoMIII. (209 aa)    
Predicted Functional Partners:
Dtox_1529
TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: ngk:NGK_0307 DNA cytosine methyltransferase M.NgoMIII; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
  
  
 0.785
Dtox_1531
KEGG: abc:ACICU_01349 hypothetical protein.
       0.636
Dtox_1532
PFAM: SEC-C motif domain protein; KEGG: abc:ACICU_01350 SecC motif-containing protein.
       0.632
Dtox_1528
Transcriptional regulator, XRE family; KEGG: cha:CHAB381_0330 hypothetical protein.
       0.615
Dtox_1533
Hypothetical protein.
       0.586
Dtox_1534
PFAM: SEC-C motif domain protein; KEGG: abb:ABBFA_002518 hypothetical protein.
       0.550
Dtox_1535
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: fta:FTA_0703 ATP-binding transcriptional regulator.
       0.501
Dtox_1536
TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: nmc:NMC0678 putative NmeDIP very-short-patch- repair endonuclease.
       0.487
Dtox_1537
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: she:Shewmr4_3209 putative transcriptional regulator.
       0.487
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.