STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_1622TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB. (485 aa)    
Predicted Functional Partners:
Dtox_1981
PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; KEGG: surface antigen BspA-like.
  
     0.688
Dtox_1988
PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; KEGG: surface antigen BspA-like.
  
    0.625
Dtox_0851
PFAM: regulatory protein MerR; Resolvase domain; SMART: regulatory protein MerR; KEGG: xfm:Xfasm12_1564 hypothetical protein.
  
    0.622
Dtox_2681
PFAM: S-layer domain protein; cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: hypothetical protein.
  
     0.622
Dtox_2781
PFAM: Resolvase domain; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: xfm:Xfasm12_1564 hypothetical protein.
  
    0.622
Dtox_0751
PFAM: Resolvase domain; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: xfm:Xfasm12_1564 hypothetical protein.
  
    0.621
Dtox_2000
KEGG: xfm:Xfasm12_1564 hypothetical protein; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Resolvase domain; regulatory protein MerR; SMART: regulatory protein MerR.
  
    0.617
Dtox_1241
PFAM: Resolvase domain; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: xfm:Xfasm12_1564 hypothetical protein.
  
    0.611
Dtox_4230
KEGG: vvu:VV1_0114 hypothetical protein.
  
     0.543
Dtox_0528
PFAM: Domain of unknown function DUF1835; KEGG: bar:GBAA2625 hypothetical protein.
  
     0.536
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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