STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_1806Putative transmembrane anti-sigma factor. (392 aa)    
Predicted Functional Partners:
Dtox_1808
KEGG: aba:Acid345_1572 hypothetical protein.
 
     0.952
Dtox_1805
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bar:GBAA2732 RNA polymerase sigma factor SigX; Belongs to the sigma-70 factor family. ECF subfamily.
   0.940
Dtox_1807
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acp:A2cp1_0670 ABC transporter related.
 
    0.934
Dtox_0130
PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein.
  
     0.600
Dtox_1832
TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; transposase IS200- family protein; KEGG: acr:Acry_3575 IS605 family transposase OrfB.
  
     0.585
Dtox_0186
TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; KEGG: acr:Acry_3575 IS605 family transposase OrfB.
  
     0.579
Dtox_3421
TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; KEGG: acr:Acry_3575 IS605 family transposase OrfB.
  
     0.579
Dtox_2121
TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; KEGG: acr:Acry_3575 IS605 family transposase OrfB.
  
     0.574
Dtox_1311
KEGG: baa:BA_0632 SASP, small, acid-soluble spore proteins, alpha/beta type.
  
     0.550
Dtox_3955
SMART: AAA ATPase; KEGG: msu:MS1390 hypothetical protein.
  
     0.549
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.