STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_1828PFAM: Integrase catalytic region; KEGG: gur:Gura_1105 integrase catalytic subunit. (341 aa)    
Predicted Functional Partners:
Dtox_1829
SMART: AAA ATPase; KEGG: glo:Glov_2122 AAA ATPase.
   
 0.986
Dtox_1827
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; S-layer domain protein; KEGG: bha:BH1491 protease; Belongs to the peptidase S8 family.
       0.741
Dtox_3414
Dehydrogenase (flavoprotein)-like protein.
  
     0.531
Dtox_3923
Dehydrogenase (flavoprotein)-like protein.
  
     0.521
Dtox_3408
Hypothetical protein.
  
     0.492
Dtox_2949
Dehydrogenase (flavoprotein)-like protein; KEGG: gdj:Gdia_2198 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
     0.477
Dtox_1413
KEGG: dat:HRM2_19390 hypothetical protein.
  
     0.467
Dtox_3193
Hypothetical protein; KEGG: bha:BH3635 transposase (07).
  
     0.447
Dtox_0223
TIGRFAM: spore cortex biosynthesis protein YabQ; KEGG: bar:GBAA0058 hypothetical protein.
  
     0.441
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.