STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_1906PFAM: coenzyme A transferase; KEGG: sfu:Sfum_0810 glutaconate CoA-transferase. (325 aa)    
Predicted Functional Partners:
Dtox_1907
PFAM: coenzyme A transferase; KEGG: gur:Gura_3034 glutaconate CoA-transferase.
 0.999
Dtox_1709
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: bar:GBAA4599 bifunctional acetaldehyde- CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.567
Dtox_1905
PFAM: peptidase M24; creatinase; KEGG: gsu:GSU1105 xaa-pro dipeptidase.
 
     0.524
Dtox_2801
Hypothetical protein; KEGG: dat:HRM2_38940 putative uroporphyrinogen-III decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.476
Dtox_2845
KEGG: sun:SUN_0324 mannose-1-phosphate guanylyltransferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein.
     
 0.468
Dtox_1343
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cjr:CJE1011 oxaloacetate decarboxylase, alpha subunit, putative.
  
  
 0.463
Dtox_2602
acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
  
  
 0.463
Dtox_2137
PFAM: acetyl-CoA hydrolase/transferase; KEGG: dat:HRM2_16060 Cat1.
  
   
 0.438
Dtox_1703
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gsu:GSU1377 3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  
 0.416
Dtox_0573
KEGG: plu:plu4237 hypothetical protein.
  
     0.404
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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