STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_1964PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: sus:Acid_4533 pyrrolo-quinoline quinone. (834 aa)    
Predicted Functional Partners:
Dtox_1965
Hypothetical protein; KEGG: GJ14166 gene product from transcript GJ14166- RA.
 
     0.766
Dtox_1967
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bar:GBAA3364 ABC transporter ATP-binding protein.
 
     0.766
Dtox_1968
KEGG: bar:GBAA3363 hypothetical protein.
 
     0.741
Dtox_1966
PFAM: cobalt transport protein; KEGG: bar:GBAA3365 ABC transporter permease.
       0.727
Dtox_2903
Hypothetical protein.
   
 
 0.567
Dtox_1962
PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; Pyrrolo-quinoline quinone; KEGG: aba:Acid345_4167 pyrrolo-quinoline quinone.
 
    
0.498
Dtox_1963
PFAM: S-layer domain protein; Ig domain protein group 2 domain protein; Pyrrolo-quinoline quinone; SMART: Ig domain protein group 2 domain protein; Pyrrolo-quinoline quinone; KEGG: sty:HCM2.0066c hypothetical protein.
 
    
0.467
Dtox_1969
PFAM: GLUG domain protein; KEGG: azc:AZC_1396 hypothetical protein.
      
0.417
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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