STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_1967PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bar:GBAA3364 ABC transporter ATP-binding protein. (557 aa)    
Predicted Functional Partners:
Dtox_1966
PFAM: cobalt transport protein; KEGG: bar:GBAA3365 ABC transporter permease.
 
 
 0.970
Dtox_0564
KEGG: bar:GBAA3363 hypothetical protein.
     0.967
Dtox_1968
KEGG: bar:GBAA3363 hypothetical protein.
   0.967
Dtox_1965
Hypothetical protein; KEGG: GJ14166 gene product from transcript GJ14166- RA.
 
     0.929
Dtox_2808
PFAM: ABC-2 type transporter; KEGG: sat:SYN_00244 export ABC transporter permease protein.
 
    0.887
Dtox_0562
PFAM: cobalt transport protein; KEGG: bar:GBAA3365 ABC transporter permease.
 
 
 0.883
Dtox_0318
PFAM: cobalt transport protein; KEGG: baa:BA_0724 cobalt transport protein.
 
 0.815
Dtox_3473
PFAM: cobalt transport protein; KEGG: bha:BH0166 hypothetical protein.
 
 
 0.794
Dtox_1964
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: sus:Acid_4533 pyrrolo-quinoline quinone.
 
     0.766
Dtox_0560
KEGG: bar:GBAA3366 putative lipoprotein.
 
     0.692
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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