STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2000KEGG: xfm:Xfasm12_1564 hypothetical protein; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Resolvase domain; regulatory protein MerR; SMART: regulatory protein MerR. (212 aa)    
Predicted Functional Partners:
Dtox_0465
TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB.
  
    0.638
Dtox_0853
TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB.
 
    0.630
Dtox_1896
TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB.
  
    0.620
Dtox_0954
TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB.
  
    0.618
Dtox_0044
TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB.
  
    0.617
Dtox_1605
TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB.
  
    0.617
Dtox_1622
TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB.
  
    0.617
Dtox_1106
TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB.
  
    0.616
Dtox_1774
TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB.
  
    0.615
Dtox_0478
TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB.
  
    0.614
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.