STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2020TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: scl:sce2804 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (414 aa)    
Predicted Functional Partners:
Dtox_2021
PFAM: acriflavin resistance protein; KEGG: pla:Plav_1535 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.947
Dtox_2024
PFAM: acriflavin resistance protein; KEGG: lhk:LHK_02819 NolG; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.841
Dtox_1925
PFAM: acriflavin resistance protein; KEGG: rce:RC1_0273 AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.766
Dtox_1939
PFAM: acriflavin resistance protein; KEGG: aeh:Mlg_0652 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.753
Dtox_4152
KEGG: gme:Gmet_3465 outer membrane efflux protein.
 
 
 0.753
Dtox_2810
PFAM: secretion protein HlyD family protein; KEGG: glo:Glov_3107 secretion protein HlyD family protein.
  
     0.692
Dtox_0522
PFAM: acriflavin resistance protein; KEGG: nis:NIS_0076 RND efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.635
Dtox_2019
PFAM: transcriptional regulator PadR family protein; KEGG: dal:Dalk_1122 transcriptional regulator, PadR- like family.
       0.618
Dtox_0939
PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: mno:Mnod_0406 ABC transporter related.
  
 
 0.519
Dtox_0940
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: met:M446_0091 ABC transporter related.
  
 
 0.519
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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