STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2069PFAM: GerA spore germination protein; KEGG: bha:BH1423 stage V sporulation protein AF. (505 aa)    
Predicted Functional Partners:
Dtox_2068
KEGG: bsu:BSU23400 sporulation protein VAE.
  
  
 0.894
Dtox_2380
TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein; KEGG: baa:BA_0234 hypothetical protein.
 
  
 0.882
Dtox_2381
TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein; KEGG: baa:BA_0233 hypothetical protein.
 
  
 0.866
Dtox_2379
TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein; KEGG: bha:BH1570 sporulation protein.
 
   
 0.865
Dtox_2066
RNA polymerase, sigma 28 subunit, SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.831
Dtox_2064
TIGRFAM: anti-sigma F factor antagonist; anti-anti- sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: bsu:BSU23470 anti-anti-sigma factor (antagonist of SpoIIAB); Belongs to the anti-sigma-factor antagonist family.
 
   
 0.820
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.788
spoIIAB
Anti-sigma regulatory factor, serine/threonine protein kinase; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
 
   
 0.774
Dtox_0222
TIGRFAM: sporulation protein YabP; PFAM: YabP family protein; KEGG: bha:BH0074 hypothetical protein.
  
   
 0.772
Dtox_2578
KEGG: bar:GBAA4396 stage IV sporulation protein B; TIGRFAM: stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB; SMART: PDZ/DHR/GLGF domain protein.
  
     0.772
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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