STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2229KEGG: dat:HRM2_33940 transposase family protein. (560 aa)    
Predicted Functional Partners:
Dtox_3882
KEGG: rsq:Rsph17025_3830 hypothetical protein.
  
     0.769
Dtox_1821
KEGG: rsq:Rsph17025_3830 hypothetical protein.
  
     0.694
Dtox_2239
KEGG: dat:HRM2_05840 hypothetical protein.
  
     0.502
Dtox_2230
KEGG: nam:NAMH_0969 hypothetical protein.
       0.475
Dtox_2231
KEGG: vfi:VF_A0651 hypothetical protein.
       0.455
Dtox_2228
Hypothetical protein.
       0.450
Dtox_3462
PFAM: transposase IS4 family protein; KEGG: mgm:Mmc1_2638 transposase, IS4 family protein.
  
     0.430
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.