STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2244PFAM: transposase IS66; KEGG: psa:PST_3228 ISPsy5, transposase. (480 aa)    
Predicted Functional Partners:
Dtox_1438
PFAM: IS66 Orf2 family protein; KEGG: dat:HRM2_43710 transposase.
 
     0.796
Dtox_2245
Hypothetical protein.
       0.572
Dtox_2241
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dat:HRM2_26360 phage-specific recombinase/integrase XerD; Belongs to the 'phage' integrase family.
       0.533
Dtox_2242
PFAM: integrase family protein; KEGG: dat:HRM2_26350 predicted phage-specific integrase.
       0.533
Dtox_2243
PFAM: integrase family protein; KEGG: reh:PHG056 putative integrase/recombinase; Belongs to the 'phage' integrase family.
       0.533
Dtox_0523
Transposase-like protein; KEGG: hha:Hhal_0784 transposase, IS4 family protein.
  
     0.465
Dtox_1823
Transposase-like protein; KEGG: hha:Hhal_0784 transposase, IS4 family protein.
  
     0.465
Dtox_2500
Transposase-like protein; KEGG: hha:Hhal_0784 transposase, IS4 family protein.
  
     0.465
Dtox_3301
Transposase-like protein; KEGG: hha:Hhal_0784 transposase, IS4 family protein.
  
     0.465
Dtox_3710
Transposase-like protein; KEGG: hha:Hhal_0784 transposase, IS4 family protein.
  
     0.465
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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