STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2305Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; KEGG: eba:ebA3040 penicillin-binding protein 2. (458 aa)    
Predicted Functional Partners:
Dtox_2306
PFAM: cell cycle protein; KEGG: sus:Acid_7521 penicillin-binding protein, transpeptidase; Belongs to the SEDS family.
 
 0.998
rodA
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 0.986
Dtox_1054
TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: bar:GBAA4050 stage V sporulation protein E; Belongs to the SEDS family.
 
 0.974
Dtox_2308
FHA domain-containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: mxa:MXAN_1525 FHA domain/GGDEF domain protein.
 
   
 0.936
Dtox_2309
FHA domain-containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: scl:sce2902 GGDEF domain-containing protein.
 
   
 0.934
Dtox_2307
KEGG: mxa:MXAN_5349 serine/threonine protein phosphatase, 2C family; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein.
 
  
 0.917
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
     
 0.849
Dtox_2304
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain-containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain-containing protein; KEGG: bha:BH2504 serine/threonine protein kinase.
  
  
 0.835
Dtox_2311
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.739
Dtox_1059
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
  
 
 0.683
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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