STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2338KEGG: ppd:Ppro_0048 hypothetical protein. (96 aa)    
Predicted Functional Partners:
Dtox_2337
KEGG: gur:Gura_1356 hypothetical protein.
 
     0.950
Dtox_2336
KEGG: gur:Gura_2702 hypothetical protein.
 
     0.948
Dtox_2339
HPr kinase; KEGG: ppd:Ppro_0056 HPr kinase.
 
     0.948
Dtox_2340
PFAM: asparagine synthase; KEGG: gur:Gura_1351 asparagine synthase.
 
     0.946
Dtox_3274
KEGG: gur:Gura_1356 hypothetical protein.
 
     0.790
Dtox_3271
KEGG: gur:Gura_2702 hypothetical protein.
 
     0.782
Dtox_3276
HPr kinase; KEGG: ppd:Ppro_0056 HPr kinase.
 
     0.782
Dtox_3272
PFAM: asparagine synthase; KEGG: gur:Gura_1346 asparagine synthase.
 
     0.774
Dtox_1589
KEGG: sfu:Sfum_0087 hypothetical protein.
  
     0.613
Dtox_0088
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA2957 pyruvate-flavodoxin oxidoreductase.
   
   0.601
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.