STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2387TIGRFAM: sporulation protein YunB; KEGG: baa:BA_0080 hypothetical protein. (222 aa)    
Predicted Functional Partners:
Dtox_2092
TIGRFAM: sporulation protein YtfJ; KEGG: bha:BH3195 hypothetical protein.
  
   
 0.768
Dtox_1065
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.760
Dtox_1069
TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain protein; KEGG: bha:BH2552 hypothetical protein.
  
   
 0.747
Dtox_4106
TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain protein; KEGG: bha:BH2552 hypothetical protein.
  
   
 0.734
Dtox_1068
TIGRFAM: stage II sporulation protein R; KEGG: bsu:BSU36970 required for processing of pro- sigma-E.
  
     0.721
Dtox_3071
TIGRFAM: sporulation protein YqfD; PFAM: putative stage IV sporulation YqfD; KEGG: bha:BH1360 stage IV sporulation protein.
  
     0.715
Dtox_2692
Hypothetical protein.
  
     0.688
Dtox_0227
KEGG: bar:GBAA0061 stage II sporulation protein E; TIGRFAM: stage II sporulation protein E; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein.
  
     0.686
Dtox_2105
KEGG: bar:GBAA2652 hypothetical protein.
  
     0.676
Dtox_2609
TIGRFAM: stage III sporulation protein AC; PFAM: Stage III sporulation AC family protein; KEGG: bha:BH2795 mutants block sporulation after engulfment.
  
     0.665
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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