STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2403TIGRFAM: sporulation protein YtxC; PFAM: Sporulation protein YtxC; KEGG: bsu:BSU28960 hypothetical protein. (298 aa)    
Predicted Functional Partners:
Dtox_0223
TIGRFAM: spore cortex biosynthesis protein YabQ; KEGG: bar:GBAA0058 hypothetical protein.
  
     0.765
Dtox_2605
TIGRFAM: stage III sporulation protein AG; KEGG: bha:BH2791 mutants block sporulation after engulfment.
  
   
 0.694
Dtox_2607
TIGRFAM: stage III sporulation protein AE; KEGG: bar:GBAA4413 stage III sporulation protein AE.
  
     0.686
Dtox_3071
TIGRFAM: sporulation protein YqfD; PFAM: putative stage IV sporulation YqfD; KEGG: bha:BH1360 stage IV sporulation protein.
  
     0.675
Dtox_4359
Putative membrane protein; KEGG: prw:PsycPRwf_1518 hypothetical protein.
 
     0.668
Dtox_4360
TIGRFAM: sporulation protein YyaC; PFAM: protein of unknown function DUF1256; KEGG: bsu:BSU40950 hypothetical protein.
  
     0.659
Dtox_1798
Hypothetical protein.
  
    0.656
Dtox_2606
Hypothetical protein; KEGG: bha:BH2792 mutants block sporulation after engulfment.
  
     0.647
Dtox_3049
Hypothetical protein.
  
     0.647
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.644
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.