STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2404PFAM: polysaccharide deacetylase; KEGG: bar:GBAA3679 polysaccharide deacetylase, putative. (221 aa)    
Predicted Functional Partners:
Dtox_0992
PFAM: glycoside hydrolase family 18; Peptidoglycan- binding domain 1 protein; SMART: chitinase II; KEGG: bsu:BSU34020 hypothetical protein.
 
      0.900
Dtox_1238
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: mxa:MXAN_7387 chitinase, class I.
 
      0.899
Dtox_4135
PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: bvi:Bcep1808_3211 lipopolysaccharide biosynthesis protein-like protein.
  
  
 0.611
Dtox_3980
Hypothetical protein.
  
  
 0.462
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.