STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2458TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: tgr:Tgr7_3300 addiction module antitoxin. (84 aa)    
Predicted Functional Partners:
Dtox_2459
Hypothetical protein.
       0.779
Dtox_0414
TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: rfe:RF_0827 DNA-damage-inducible protein J.
  
 
 0.606
Dtox_1714
TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: rfe:RF_0827 DNA-damage-inducible protein J.
  
 
 0.606
Dtox_2460
Hypothetical protein.
       0.508
Dtox_2456
Hypothetical protein.
       0.477
Dtox_2457
PFAM: TOPRIM domain protein; SMART: Toprim sub domain protein; KEGG: bar:GBAA_pXO1_0099 hypothetical protein.
       0.477
Dtox_4045
KEGG: scl:sce5012 hypothetical protein.
  
     0.477
vapC
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
   
 0.463
Dtox_2461
KEGG: ecq:ECED1_3590 hypothetical protein.
       0.421
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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