STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2467PFAM: TRAG family protein; KEGG: xcb:XC_2413 putative NTPase VagA. (511 aa)    
Predicted Functional Partners:
Dtox_2466
SMART: RNA binding S1 domain protein; KEGG: bsu:BSU22880 30S ribosomal protein S1.
 
     0.787
Dtox_1413
KEGG: dat:HRM2_19390 hypothetical protein.
 
    0.704
Dtox_3152
KEGG: rpi:Rpic_3191 hypothetical protein.
 
     0.683
Dtox_3153
Hypothetical protein.
 
     0.649
Dtox_3158
Hypothetical protein.
 
     0.635
Dtox_1636
Hypothetical protein.
  
     0.572
Dtox_2465
Hypothetical protein.
       0.543
Dtox_1015
PFAM: CBS domain-containing protein; SMART: CBS domain-containing protein; KEGG: dol:Dole_1341 response regulator receiver protein.
  
     0.514
Dtox_2361
Putative signal transduction protein with CBS domains; PFAM: CBS domain-containing protein; SMART: CBS domain-containing protein; KEGG: dal:Dalk_2240 response regulator receiver protein.
  
     0.472
Dtox_3285
PFAM: Recombinase; Resolvase domain; KEGG: bja:bll1540 hypothetical protein.
  
    0.463
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.