STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2488PFAM: type II secretion system protein E; KEGG: mxa:MXAN_3107 type II/IV secretion system protein. (451 aa)    
Predicted Functional Partners:
Dtox_2487
PFAM: type II secretion system protein; KEGG: bpy:Bphyt_6877 type II secretion system protein.
 
  
 0.976
Dtox_2486
PFAM: type II secretion system protein; KEGG: bba:Bd0470 Flp pilus assembly protein TadC.
 
  
 0.973
Dtox_2480
PFAM: peptidase A24A prepilin type IV; KEGG: dps:DP1537 hypothetical protein.
 
   
 0.848
Dtox_2491
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: vvu:VV1_1748 Flp pilus assembly protein CpaB.
 
  
 0.847
Dtox_2490
Septum formation inhibitor-activating ATPase- like protein; KEGG: ppd:Ppro_2701 response regulator receiver protein.
  
 0.776
Dtox_2485
Hypothetical protein.
       0.686
Dtox_2484
Hypothetical protein.
       0.620
Dtox_1488
Hypothetical protein; KEGG: oan:Oant_0727 type II secretion system protein.
  
  
 0.577
Dtox_1489
Hypothetical protein; KEGG: rlt:Rleg2_5619 type II secretion system protein.
  
  
 0.534
Dtox_2483
Hypothetical protein.
       0.450
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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