STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2569KEGG: ecc:c2762 sensory histidine kinase AtoS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein. (627 aa)    
Predicted Functional Partners:
Dtox_1973
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bsu:BSU37130 two-component response regulator.
  
   0.818
Dtox_3740
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bsu:BSU37130 two-component response regulator.
 
   0.803
Dtox_0055
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bsu:BSU37130 two-component response regulator.
  
     0.724
Dtox_0789
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: geo:Geob_1529 two component, sigma54 specific, transcriptional regulator, Fis family.
  
   0.606
Dtox_0970
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_3286 two component, sigma54 specific, transcriptional regulator, fis family.
  
   0.568
Dtox_1955
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bar:GBAA4833 DNA-binding response regulator PhoP.
 
 
   0.557
Dtox_1013
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: elf:LF82_0187 acetoacetate metabolism regulatory protein AtoC.
 
   0.552
Dtox_2180
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; KEGG: scl:sce7807 hypothetical protein.
 
 
 0.544
Dtox_1554
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bar:GBAA4777 DNA-binding response regulator.
  
 
   0.536
Dtox_0049
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: dvl:Dvul_2284 two component, sigma54 specific, Fis family transcriptional regulator.
  
   0.530
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.