STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2600Hypothetical protein. (178 aa)    
Predicted Functional Partners:
Dtox_2599
Hypothetical protein.
 
     0.917
Dtox_2606
Hypothetical protein; KEGG: bha:BH2792 mutants block sporulation after engulfment.
 
    0.779
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
    0.762
Dtox_3258
PFAM: membrane protein of unknown function; KEGG: aca:ACP_1958 hypothetical protein.
  
     0.733
Dtox_1125
Hypothetical protein.
  
     0.683
Dtox_2601
PFAM: protein of unknown function DUF322; KEGG: bar:GBAA3995 hypothetical protein.
 
     0.658
Dtox_2357
KEGG: bsu:BSU24440 hypothetical protein.
  
     0.651
Dtox_2610
KEGG: bsu:BSU24420 stage III sporulation protein SpoAB.
 
     0.647
Dtox_2602
acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
  
    0.639
Dtox_2603
TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: Conserved carboxylase region; pyruvate carboxyltransferase; biotin/lipoyl attachment domain- containing protein; KEGG: psa:PST_0187 pyruvate carboxylase subunit B.
     
 0.603
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.