STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2680Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain-containing protein AraC type; SMART: helix-turn-helix- domain-containing protein AraC type; KEGG: dds:Ddes_0430 transcriptional regulator, AraC family. (329 aa)    
Predicted Functional Partners:
Dtox_2656
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pst:PSPTO_2604 ABC transporter, ATP- binding/permease protein.
 
    0.761
Dtox_2655
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rru:Rru_A0188 ABC transporter, transmembrane region.
 
    0.737
Dtox_3846
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain-containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix- domain-containing protein AraC type; KEGG: bha:BH3679 two-component response regulator.
  
   0.683
Dtox_2681
PFAM: S-layer domain protein; cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: hypothetical protein.
 
     0.642
Dtox_2674
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Methyltransferase type 12; Non-ribosomal peptide synthetase; condensation domain protein; KEGG: pfl:PFL_3492 pyochelin synthetase F.
 
  
 0.628
Dtox_2679
Oleoyl-(acyl-carrier-protein) hydrolase; PFAM: Thioesterase; KEGG: scl:sce0356 thioesterase.
 
   
 0.611
Dtox_1537
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: she:Shewmr4_3209 putative transcriptional regulator.
  
     0.586
Dtox_0423
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain-containing protein AraC type; SMART: helix-turn-helix- domain-containing protein AraC type; KEGG: scl:sce7020 AraC family transcriptional regulator.
 
 
 0.580
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.562
Dtox_2657
TIGRFAM: conserved hypothetical protein.
 
    0.547
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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