STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2801Hypothetical protein; KEGG: dat:HRM2_38940 putative uroporphyrinogen-III decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (301 aa)    
Predicted Functional Partners:
Dtox_0023
PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: dal:Dalk_2920 cobalamin B12-binding domain protein; Belongs to the uroporphyrinogen decarboxylase family.
  
  
  0.963
Dtox_1252
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dal:Dalk_4009 uroporphyrin-III C- methyltransferase.
  
 
 0.960
Dtox_3225
KEGG: gsu:GSU0030 oxygen-independent coproporphyrinogen III oxidase, putative; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
 
 0.911
Dtox_3377
Coproporphyrinogen dehydrogenase; KEGG: baa:BA_1457 Coprogen_an_ox, oxygen- independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
 
 0.911
Dtox_3758
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: bha:BH1728 glutamate synthase (large subunit).
     
 0.677
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 
 0.646
Dtox_3083
Ferredoxin; KEGG: sfu:Sfum_0797 ferredoxin.
 
    0.563
Dtox_0573
KEGG: plu:plu4237 hypothetical protein.
  
     0.558
Dtox_2941
PFAM: homocysteine S-methyltransferase; cobalamin B12-binding domain protein; Methionine synthase B12- binding module cap domain protein; dihydropteroate synthase DHPS; KEGG: gsu:GSU2921 5-methyltetrahydrofolate- homocysteine methyltransferase, truncation.
     
 0.553
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.550
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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