STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2810PFAM: secretion protein HlyD family protein; KEGG: glo:Glov_3107 secretion protein HlyD family protein. (368 aa)    
Predicted Functional Partners:
Dtox_2808
PFAM: ABC-2 type transporter; KEGG: sat:SYN_00244 export ABC transporter permease protein.
  
 0.966
Dtox_2809
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_3276 ABC transporter related protein.
    0.944
Dtox_4149
KEGG: bsu:BSU09000 hypothetical protein.
  
     0.738
Dtox_0521
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tdn:Suden_0535 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.720
Dtox_1924
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4241 multidrug RND transporter, membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.714
Dtox_2020
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: scl:sce2804 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.692
Dtox_4152
KEGG: gme:Gmet_3465 outer membrane efflux protein.
  
 
 0.664
Dtox_2872
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_1830 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.605
Dtox_2807
Hypothetical protein.
       0.532
Dtox_0939
PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: mno:Mnod_0406 ABC transporter related.
  
 
 0.519
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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