STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2840PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pub:SAR11_0558 cyclopropane-fatty-acyl- phospholipid. (235 aa)    
Predicted Functional Partners:
Dtox_2841
KEGG: glo:Glov_1957 methyltransferase type 11.
 
  
 0.921
Dtox_2838
PFAM: glycosyl transferase group 1; KEGG: fph:Fphi_1475 glycosyl transferase, group 1.
 
   
 0.837
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
     
 0.790
fcl
NAD-dependent epimerase/dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
     
 0.765
Dtox_1981
PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; KEGG: surface antigen BspA-like.
  
     0.757
Dtox_2681
PFAM: S-layer domain protein; cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: hypothetical protein.
  
     0.727
Dtox_2839
PFAM: NAD-dependent epimerase/dehydratase; KEGG: gur:Gura_3780 NAD-dependent epimerase/dehydratase.
     
 0.714
Dtox_1988
PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; KEGG: surface antigen BspA-like.
  
     0.709
Dtox_2674
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Methyltransferase type 12; Non-ribosomal peptide synthetase; condensation domain protein; KEGG: pfl:PFL_3492 pyochelin synthetase F.
     
 0.708
Dtox_1987
KEGG: glycoprotein (predicted).
  
     0.696
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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