STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3019Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: dal:Dalk_0737 helix-turn-helix domain protein. (281 aa)    
Predicted Functional Partners:
Dtox_3020
KEGG: gur:Gura_2842 AAA family ATPase, CDC48 subfamily protein; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase central domain protein; cell division protein 48 CDC48 domain 2; AAA ATPase VAT domain protein; SMART: AAA ATPase; Belongs to the AAA ATPase family.
       0.718
Dtox_3021
KEGG: gur:Gura_2833 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.
       0.607
Dtox_3022
Gas vesicle protein GVPa; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
       0.556
Dtox_3023
PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: gur:Gura_2826 gas vesicle synthesis GvpLGvpF.
       0.520
Dtox_3024
KEGG: gur:Gura_2827 hypothetical protein.
       0.520
Dtox_3025
Gas vesicle protein GVPa; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
       0.510
Dtox_3026
Hypothetical protein.
       0.510
Dtox_3027
PFAM: Gas vesicle G; KEGG: gur:Gura_2831 gas vesicle G.
       0.510
Dtox_3028
PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: gur:Gura_2834 gas vesicle synthesis GvpLGvpF.
       0.486
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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