STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3071TIGRFAM: sporulation protein YqfD; PFAM: putative stage IV sporulation YqfD; KEGG: bha:BH1360 stage IV sporulation protein. (420 aa)    
Predicted Functional Partners:
Dtox_3072
TIGRFAM: sporulation protein YqfC; PFAM: protein of unknown function DUF1429; KEGG: bha:BH1359 hypothetical protein.
 
  
 0.991
Dtox_1172
TIGRFAM: sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein; KEGG: bar:GBAA4138 hypothetical protein.
 
   
 0.854
Dtox_0222
TIGRFAM: sporulation protein YabP; PFAM: YabP family protein; KEGG: bha:BH0074 hypothetical protein.
 
   
 0.817
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.816
Dtox_3069
KEGG: bsu:BSU25330 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase 7TM extracellular region; metal-dependent phosphohydrolase 7TM intracellular region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
       0.816
Dtox_3070
PFAM: PhoH family protein; KEGG: bar:GBAA4529 PhoH family protein.
       0.816
Dtox_1065
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.802
Dtox_1068
TIGRFAM: stage II sporulation protein R; KEGG: bsu:BSU36970 required for processing of pro- sigma-E.
  
  
 0.802
Dtox_4159
TIGRFAM: sporulation transcriptional regulator SpoIIID; KEGG: bha:BH3740 transcriptional regulator of sigma- E- and sigma-K-dependent.
  
   
 0.799
Dtox_2469
KEGG: baa:BA_0374 hypothetical protein.
  
   
 0.798
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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