STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3100Hypothetical protein. (176 aa)    
Predicted Functional Partners:
Dtox_3099
PFAM: metallophosphoesterase; KEGG: gsu:GSU1138 Ser/Thr protein phosphatase family protein.
       0.836
Dtox_0207
KEGG: bha:BH1264 hypothetical protein.
  
     0.751
Dtox_1081
Hypothetical protein.
  
     0.718
Dtox_2259
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: wpi:WPa_0277 putative transcriptional regulator.
  
     0.646
Dtox_3233
Conserved hypothetical protein; KEGG: GM23411 gene product from transcript GM23411- RA.
  
     0.615
rny
RNA binding metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
       0.612
Dtox_3098
PFAM: Stage V sporulation protein S; KEGG: bsu:BSU16980 required for dehydratation of the spore core and assembly of the coat (stage V sporulation).
       0.606
Dtox_4350
Sigma 54 interacting domain protein; KEGG: bha:BH3051 ATP-dependent proteinase La; TIGRFAM: ATP-dependent protease, Lon family; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; magnesium chelatase ChlI subunit; SMART: AAA ATPase.
  
     0.598
Dtox_0560
KEGG: bar:GBAA3366 putative lipoprotein.
  
     0.589
Dtox_3049
Hypothetical protein.
  
     0.567
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.