STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3256KEGG: lhk:LHK_00032 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase. (360 aa)    
Predicted Functional Partners:
Dtox_3255
PFAM: type II secretion system protein; KEGG: gsu:GSU1493 type IV pilus biogenesis protein PilC.
  
 0.928
Dtox_3253
TIGRFAM: type IV pilus assembly protein PilM; KEGG: pca:Pcar_2138 Tfp pilus assembly protein, ATPase PilM.
 
   
 0.913
Dtox_3257
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: glo:Glov_1653 type IV-A pilus assembly ATPase PilB.
 
  
0.852
Dtox_2664
PFAM: type II secretion system protein; KEGG: pca:Pcar_0873 type II secretory pathway, PilC- like.
 
  
 0.805
Dtox_2707
PFAM: type II secretion system protein; KEGG: sat:SYN_01284 general secretion pathway protein F.
  
 0.804
Dtox_2663
Peptidase A24A domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.775
Dtox_3768
PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: ppd:Ppro_0982 prepilin peptidase.
 
   
 0.767
Dtox_3248
Hypothetical protein; KEGG: ppd:Ppro_1656 pilin domain-containing protein.
 
     0.727
Dtox_3251
Hypothetical protein; KEGG: sfr:Sfri_0372 pilus assembly protein, PilO.
 
  
 0.698
Dtox_3252
PFAM: Fimbrial assembly family protein; KEGG: pag:PLES_54331 type 4 fimbrial biogenesis protein PilN.
  
  
 0.663
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.