STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3296KEGG: viral A-type inclusion protein. (528 aa)    
Predicted Functional Partners:
Dtox_3295
Hypothetical protein.
       0.788
Dtox_3297
Hypothetical protein.
       0.788
Dtox_3298
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: rpe:RPE_2167 DEAD/DEAH box helicase domain protein.
       0.779
Dtox_3299
PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: eli:ELI_08230 DNA-methyltransferase.
       0.773
Dtox_3293
Transcriptional regulator, XRE family; KEGG: cha:CHAB381_0330 hypothetical protein.
       0.421
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.