STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3327Conserved hypothetical protein; KEGG: ppd:Ppro_0351 radical SAM domain-containing protein. (232 aa)    
Predicted Functional Partners:
Dtox_3328
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_1610 radical SAM domain protein.
    0.996
Dtox_3326
Ribonuclease, Rne/Rng family; KEGG: gme:Gmet_3192 ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: deoxyribonuclease/rho motif-related TRAM; SMART: RNA binding S1 domain protein.
       0.752
Dtox_3329
PFAM: peptidase M50; KEGG: gdj:Gdia_0458 peptidase M50.
       0.643
Dtox_3330
PFAM: Peptidase M23; KEGG: sal:Sala_2738 peptidase M23B.
       0.625
Dtox_3337
TIGRFAM: rod shape-determining protein MreD; KEGG: gur:Gura_2859 hypothetical protein.
 
     0.472
Dtox_2311
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
     0.437
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
       0.436
Dtox_3334
TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bha:BH3027 septum site-determining protein.
       0.423
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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