STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3329PFAM: peptidase M50; KEGG: gdj:Gdia_0458 peptidase M50. (290 aa)    
Predicted Functional Partners:
Dtox_3330
PFAM: Peptidase M23; KEGG: sal:Sala_2738 peptidase M23B.
       0.832
Dtox_3327
Conserved hypothetical protein; KEGG: ppd:Ppro_0351 radical SAM domain-containing protein.
       0.643
Dtox_3328
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_1610 radical SAM domain protein.
       0.641
Dtox_3326
Ribonuclease, Rne/Rng family; KEGG: gme:Gmet_3192 ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: deoxyribonuclease/rho motif-related TRAM; SMART: RNA binding S1 domain protein.
       0.603
Dtox_3331
Hypothetical protein; KEGG: cja:CJA_0975 von Willebrand factor type A domain protein.
       0.568
rodA
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
  
    0.541
Dtox_2578
KEGG: bar:GBAA4396 stage IV sporulation protein B; TIGRFAM: stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB; SMART: PDZ/DHR/GLGF domain protein.
  
   
 0.521
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
       0.484
Dtox_3337
TIGRFAM: rod shape-determining protein MreD; KEGG: gur:Gura_2859 hypothetical protein.
 
     0.479
Dtox_3334
TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bha:BH3027 septum site-determining protein.
       0.461
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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