STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3330PFAM: Peptidase M23; KEGG: sal:Sala_2738 peptidase M23B. (256 aa)    
Predicted Functional Partners:
Dtox_3329
PFAM: peptidase M50; KEGG: gdj:Gdia_0458 peptidase M50.
       0.832
Dtox_2504
PFAM: Peptidase M23; Lytic transglycosylase catalytic; KEGG: cju:C8J_1158 peptidase, M23/M37 family.
  
   
 0.788
Dtox_2389
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: sat:SYN_00304 multimodular transpeptidase- transglycosylase.
  
   
 0.663
Dtox_3328
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_1610 radical SAM domain protein.
  
    0.643
Dtox_2820
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: bsu:BSU10110 penicillin-binding protein 2C.
  
     0.639
Dtox_1300
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: baa:BA_0478 transglycosylase.
  
   
 0.627
Dtox_3327
Conserved hypothetical protein; KEGG: ppd:Ppro_0351 radical SAM domain-containing protein.
       0.625
Dtox_3326
Ribonuclease, Rne/Rng family; KEGG: gme:Gmet_3192 ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: deoxyribonuclease/rho motif-related TRAM; SMART: RNA binding S1 domain protein.
  
    0.581
Dtox_3331
Hypothetical protein; KEGG: cja:CJA_0975 von Willebrand factor type A domain protein.
       0.580
rodA
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
   
 0.560
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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