STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3421TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; KEGG: acr:Acry_3575 IS605 family transposase OrfB. (410 aa)    
Predicted Functional Partners:
Dtox_3955
SMART: AAA ATPase; KEGG: msu:MS1390 hypothetical protein.
  
     0.755
Dtox_0834
TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; KEGG: baa:BA_2006 hypothetical protein.
  
     0.697
Dtox_3384
TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; KEGG: baa:BA_2006 hypothetical protein.
  
     0.695
Dtox_2881
TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; KEGG: baa:BA_2006 hypothetical protein.
  
     0.694
Dtox_0412
Nucleic acid-binding protein contains PIN domain- like protein; KEGG: sme:SMa0545 hypothetical protein.
  
     0.622
Dtox_1012
KEGG: cko:CKO_00550 sensory histidine kinase AtoS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
  
     0.596
Dtox_1806
Putative transmembrane anti-sigma factor.
  
     0.579
Dtox_0969
PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: eum:ECUMN_2557 sensory histidine kinase in two-component regulatory system with AtoC.
  
     0.565
Dtox_1943
PFAM: Protein of unknown function DUF1638; KEGG: dat:HRM2_24360 hypothetical protein.
  
     0.551
Dtox_1808
KEGG: aba:Acid345_1572 hypothetical protein.
  
     0.546
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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