STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3426Signal transduction histidine kinase, nitrogen specific, NtrB; KEGG: gbm:Gbem_2865 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain-containing protein. (556 aa)    
Predicted Functional Partners:
Dtox_1973
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bsu:BSU37130 two-component response regulator.
  
  0.980
Dtox_3740
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bsu:BSU37130 two-component response regulator.
 
  0.979
Dtox_0055
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bsu:BSU37130 two-component response regulator.
  
  
  0.971
Dtox_2041
Sporulation transcriptional activator Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
  
  
  0.942
Dtox_3081
KEGG: bsu:BSU14490 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain-containing protein.
  
  
 
0.903
Dtox_3428
PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B.
 
     0.665
Dtox_0713
MCP methyltransferase, CheR-type; KEGG: bha:BH1655 chemotaxis protein methyltransferase; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type.
 
      0.664
Dtox_3008
MCP methyltransferase, CheR-type; KEGG: baa:BA_1563 CheR methyltransferase; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type.
 
      0.651
Dtox_0970
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_3286 two component, sigma54 specific, transcriptional regulator, fis family.
 
   0.614
Dtox_3785
MCP methyltransferase, CheR-type; KEGG: vvy:VVA0934 methylase of chemotaxis methyl- accepting protein; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type.
 
      0.609
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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