STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3435PFAM: Radical SAM domain protein; KEGG: gur:Gura_1003 radical SAM domain-containing protein. (492 aa)    
Predicted Functional Partners:
Dtox_3437
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gur:Gura_1001 methyltransferase type 11.
 
     0.961
Dtox_3436
TIGRFAM: C_GCAxxG_C_C family protein; KEGG: ppd:Ppro_1547 hypothetical protein.
 
     0.952
Dtox_3438
KEGG: dat:HRM2_07060 hypothetical protein.
 
     0.945
Dtox_3439
PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: gur:Gura_0999 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
     0.940
Dtox_3432
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: gur:Gura_1006 metal dependent phosphohydrolase.
     0.930
Dtox_3434
KEGG: gur:Gura_1004 coenzyme F390 synthetase-like protein.
 
     0.925
Dtox_3440
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: sfu:Sfum_1310 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
     0.917
Dtox_3433
PFAM: protein of unknown function DUF182; KEGG: gur:Gura_1005 hypothetical protein.
 
     0.896
Dtox_3453
KEGG: sfu:Sfum_1317 metal dependent phosphohydrolase.
     0.830
Dtox_3431
PFAM: Phosphoglycerate mutase; KEGG: gur:Gura_1007 phosphoglycerate mutase.
 
     0.723
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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