STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3462PFAM: transposase IS4 family protein; KEGG: mgm:Mmc1_2638 transposase, IS4 family protein. (465 aa)    
Predicted Functional Partners:
Dtox_2239
KEGG: dat:HRM2_05840 hypothetical protein.
  
     0.715
Dtox_0359
KEGG: dal:Dalk_3879 transposase-like protein.
  
     0.666
Dtox_1836
KEGG: dal:Dalk_3879 transposase-like protein.
  
     0.666
Dtox_2540
KEGG: dal:Dalk_3879 transposase-like protein.
  
     0.666
Dtox_3856
KEGG: dal:Dalk_3879 transposase-like protein.
  
     0.666
Dtox_4038
KEGG: dal:Dalk_3879 transposase-like protein.
  
     0.666
Dtox_1626
PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2552 transposase IS4 family protein.
  
     0.632
Dtox_3463
Hypothetical protein; KEGG: shn:Shewana3_3655 IS4 family transposase.
      
0.527
Dtox_4056
PFAM: plasmid stabilization system; KEGG: pna:Pnap_4619 hypothetical protein.
  
     0.453
Dtox_0232
KEGG: dat:HRM2_21770 transposase (IS4 family protein).
  
     0.434
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.