STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3511PFAM: Radical SAM domain protein; SMART: PDZ/DHR/GLGF domain protein; Elongator protein 3/MiaB/NifB; KEGG: dvl:Dvul_2372 molybdenum cofactor biosynthesis protein A. (475 aa)    
Predicted Functional Partners:
Dtox_0786
Hypothetical protein.
  
     0.506
tsaD
Metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
       0.506
Dtox_2850
Hypothetical protein; KEGG: aba:Acid345_0662 parallel beta-helix repeat protein.
  
     0.470
Dtox_3600
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: bpy:Bphyt_5562 transport-associated.
  
     0.462
Dtox_1376
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sfu:Sfum_2006 integral membrane sensor signal transduction histidine kinase.
  
     0.454
Dtox_3510
PFAM: amino acid-binding ACT domain protein; KEGG: glo:Glov_1859 amino acid-binding ACT domain protein.
       0.445
Dtox_1866
Hypothetical protein; KEGG: sfu:Sfum_3184 replicative DNA helicase.
  
     0.428
Dtox_3428
PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B.
  
     0.426
Dtox_1943
PFAM: Protein of unknown function DUF1638; KEGG: dat:HRM2_24360 hypothetical protein.
  
     0.407
Dtox_2548
KEGG: dal:Dalk_0684 hypothetical protein.
  
     0.404
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.