STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3513PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rec:RHECIAT_PC0000438 putative metal- dependent hydrolase protein. (236 aa)    
Predicted Functional Partners:
Dtox_1692
TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; KEGG: sat:SYN_01071 cysteine desulfurase / selenocysteine lyase.
    
   0.741
Dtox_3075
TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sat:SYN_01071 cysteine desulfurase / selenocysteine lyase.
    
   0.741
Dtox_2043
Hypothetical protein.
  
     0.600
Dtox_4319
KEGG: rde:RD1_3736 hypothetical protein.
   
  
 0.594
Dtox_2045
KEGG: bha:BH2768 hypothetical protein.
  
     0.585
tsaD
Metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
       0.545
Dtox_4320
Phospholipase D; KEGG: hypothetical protein; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase.
 
    0.541
Dtox_2047
KEGG: bha:BH1523 hypothetical protein.
  
     0.534
Dtox_1115
KEGG: bha:BH0549 hypothetical protein.
  
     0.470
Dtox_2042
PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: bha:BH2771 hypothetical protein.
  
     0.468
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.