STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3522PFAM: SCP-like extracellular; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: bha:BH2878 hypothetical protein. (290 aa)    
Predicted Functional Partners:
Dtox_3820
PFAM: inner-membrane translocator; KEGG: geo:Geob_2801 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
    
   0.592
Dtox_2342
PFAM: coagulation factor 5/8 type domain protein; KEGG: gur:Gura_0755 coagulation factor 5/8 type domain-containing protein.
   
    0.451
Dtox_3124
PFAM: Collagen triple helix repeat; KEGG: mlo:mlr0585 hypothetical protein.
   
    0.451
Dtox_3523
Hypothetical protein.
       0.447
Dtox_3524
Hypothetical protein.
       0.447
Dtox_1239
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: mxa:MXAN_7387 chitinase, class I.
 
    0.418
Dtox_3525
PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3606 hypothetical protein.
  
    0.405
Dtox_3526
Hypothetical protein.
       0.404
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.