STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3662PFAM: integrase family protein; KEGG: baa:BA_1005 Phage_integrase, phage integrase family; Belongs to the 'phage' integrase family. (389 aa)    
Predicted Functional Partners:
Dtox_3663
Hypothetical protein.
       0.773
Dtox_3664
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: xac:XAC1493 transcriptional regulator.
       0.527
Dtox_3665
TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Prophage CP4-57 regulatory.
       0.527
Dtox_2435
KEGG: bar:GBAA3830 prophage LambdaBa01, repressor protein, putative.
  
  
 0.480
Dtox_3666
PFAM: major capsid protein HK97; KEGG: bph:Bphy_7144 HK97 family phage major capsid protein.
  
  
 0.453
Dtox_3916
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: ppw:PputW619_4151 tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
    0.424
Dtox_2577
PFAM: Resolvase domain; Recombinase; KEGG: bsu:BSU25770 site-specific DNA recombinase.
  
  
 0.423
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.