STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3887PFAM: KilA domain protein; KEGG: geo:Geob_0035 KilA domain protein. (197 aa)    
Predicted Functional Partners:
Dtox_3885
Hypothetical protein.
       0.596
Dtox_3886
Hypothetical protein.
       0.596
Dtox_3888
PFAM: Recombinase; KEGG: mes:Meso_2219 recombinase.
       0.565
Dtox_3883
PFAM: KilA domain protein; KEGG: gur:Gura_3302 hypothetical protein.
 
    
0.522
Dtox_3884
Hypothetical protein.
       0.522
Dtox_0998
KEGG: mmw:Mmwyl1_4371 hypothetical protein.
 
     0.496
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.