STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3913KEGG: sat:SYN_01895 putative cytoplasmic protein. (287 aa)    
Predicted Functional Partners:
Dtox_3911
PFAM: AIG2 family protein; KEGG: pub:SAR11_1133 hypothetical protein.
 
    0.880
Dtox_3914
Sigma 54 interacting domain protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ypg:YpAngola_0071 ABC transporter, ATP- binding protein.
 
     0.856
Dtox_1252
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dal:Dalk_4009 uroporphyrin-III C- methyltransferase.
  
  
 0.836
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
  
 
 0.830
cysC-2
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
  
 
 0.830
Dtox_3908
TIGRFAM: phage uncharacterized protein; KEGG: hsm:HSM_0666 phage uncharacterized protein.
 
     0.814
Dtox_3912
Hypothetical protein.
       0.773
Dtox_1866
Hypothetical protein; KEGG: sfu:Sfum_3184 replicative DNA helicase.
  
     0.772
Dtox_2850
Hypothetical protein; KEGG: aba:Acid345_0662 parallel beta-helix repeat protein.
  
    0.771
Dtox_1847
KEGG: ecg:E2348C_2658 hypothetical protein.
  
     0.762
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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