STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3916PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: ppw:PputW619_4151 tyrosine recombinase XerD; Belongs to the 'phage' integrase family. (295 aa)    
Predicted Functional Partners:
Dtox_3924
PFAM: integrase family protein; KEGG: spl:Spea_0380 tyrosine recombinase XerC; Belongs to the 'phage' integrase family.
  
     0.773
Dtox_3694
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: bpt:Bpet1305 putative integrase/recombinase; Belongs to the 'phage' integrase family.
  
     0.772
Dtox_2242
PFAM: integrase family protein; KEGG: dat:HRM2_26350 predicted phage-specific integrase.
  
     0.762
Dtox_1435
PFAM: integrase family protein; KEGG: dat:HRM2_26350 predicted phage-specific integrase.
  
     0.702
Dtox_3692
PFAM: integrase family protein; KEGG: bpt:Bpet1450 integrase/recombinase.
  
     0.667
Dtox_2214
PFAM: integrase domain protein SAM domain protein; integrase family protein; KEGG: dat:HRM2_26340 XerC; Belongs to the 'phage' integrase family.
  
     0.593
Dtox_1415
PFAM: integrase family protein; KEGG: plu:plu1152 hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.570
Dtox_3693
PFAM: integrase family protein; KEGG: dat:HRM2_26350 predicted phage-specific integrase.
  
     0.527
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
   
 0.523
Dtox_3915
Hypothetical protein.
       0.520
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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