STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3941Conserved hypothetical protein; Displays ATPase and GTPase activities. (294 aa)    
Predicted Functional Partners:
Dtox_3940
Protein of unknown function UPF0052 and CofD; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
  
 0.974
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
 0.930
Dtox_3326
Ribonuclease, Rne/Rng family; KEGG: gme:Gmet_3192 ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: deoxyribonuclease/rho motif-related TRAM; SMART: RNA binding S1 domain protein.
 
 
 
 0.815
Dtox_3942
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: slo:Shew_1420 putative hydrolase.
       0.741
Dtox_3943
PFAM: sugar isomerase (SIS).
       0.718
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
   
 0.663
hpf
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
 
  
 0.645
Dtox_3938
TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; KEGG: gsu:GSU1887 RNA polymerase sigma-54 factor.
  
  
 0.627
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
    
 0.614
Dtox_3944
TIGRFAM: glycogen debranching enzyme; PFAM: Amylo-alpha-16-glucosidase; KEGG: scl:sce2296 4-alpha-glucanotransferase.
       0.540
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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