STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_4029TIGRFAM: Mg chelatase, subunit ChlI; DNA protecting protein DprA; PFAM: magnesium chelatase ChlI subunit; SMF family protein; ATPase associated with various cellular activities AAA_5; KEGG: gur:Gura_4031 Mg chelatase, subunit ChlI. (748 aa)    
Predicted Functional Partners:
Dtox_3978
KEGG: pca:Pcar_2573 amidophosphoribosyltransferase.
 
 
 0.954
Dtox_3303
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: ppd:Ppro_1379 DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.885
Dtox_1218
PFAM: protein of unknown function UPF0102; KEGG: sat:SYN_00772 endonuclease; Belongs to the UPF0102 family.
 
  
 0.854
Dtox_1555
KEGG: met:M446_6441 GAF sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; PAS fold- 4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain-containing protein.
  
  
 0.778
Dtox_1576
KEGG: sse:Ssed_2865 signal transduction histidine kinase-like protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; Hpt domain protein; Cache domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain-containing protein; histidine kinase HAMP region domain protein.
  
  
 0.754
Dtox_0767
KEGG: tgr:Tgr7_1990 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain-containing protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain-containing protein; PAC repeat-containing protein; PAS domain-containing protein.
  
    0.737
Dtox_0717
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: baa:BA_2177 surface presentation of antigens (SPOA) protein.
  
    0.726
Dtox_3765
CheC, inhibitor of MCP methylation; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: bsu:BSU16320 flagellar motor switch protein.
  
    0.726
Dtox_1949
Diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; GGDEF domain-containing protein; CBS domain-containing protein; SMART: EAL domain protein; GGDEF domain-containing protein; KEGG: dde:Dde_1628 diguanylate cyclase/phosphodiesterase.
  
    0.684
Dtox_0047
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: nmu:Nmul_A0328 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain-containing protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain-containing protein; PAC repeat-containing protein; PAS domain-containing protein.
  
    0.655
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.