STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_4147PFAM: S-layer domain protein; KEGG: baa:BA_1454 Amidase_2, N-acetylmuramoyl-L- alanine amidase. (364 aa)    
Predicted Functional Partners:
Dtox_4153
PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein.
 
     0.806
Dtox_0892
SMART: Rhodanese domain protein; KEGG: abo:ABO_1993 rhodanese domain-containing protein.
  
   
 0.788
Dtox_4122
PFAM: polysaccharide pyruvyl transferase; KEGG: baa:BA_1468 hypothetical protein.
 
   
 0.781
Dtox_0587
PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein.
 
     0.777
Dtox_3690
PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein.
  
   
 0.777
Dtox_3230
PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein.
  
   
 0.775
Dtox_3267
PFAM: S-layer domain protein; KEGG: hypothetical protein.
  
     0.775
Dtox_3982
PFAM: S-layer domain protein; KEGG: hypothetical protein.
  
     0.775
Dtox_0618
PFAM: S-layer domain protein; KEGG: hypothetical protein.
  
     0.774
Dtox_2591
PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein.
  
     0.774
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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