STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_4156Putative transmembrane anti-sigma factor; KEGG: sfu:Sfum_1326 hypothetical protein. (366 aa)    
Predicted Functional Partners:
Dtox_4155
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: tbd:Tbd_2095 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.873
Dtox_4157
PFAM: S-layer domain protein; peptidase S8 and S53 subtilisin kexin sedolisin; peptidase domain protein; KEGG: ade:Adeh_3524 peptidase S8 and S53.
 
   
 0.780
Dtox_4152
KEGG: gme:Gmet_3465 outer membrane efflux protein.
  
     0.748
Dtox_3228
KEGG: cbg:CbuG_1666 hypothetical cytosolic protein.
  
     0.736
Dtox_0560
KEGG: bar:GBAA3366 putative lipoprotein.
  
     0.711
Dtox_2738
Sugar kinase-like protein; KEGG: mch:Mchl_2163 beta-ribofuranosylaminobenzene 5'-phosphate synthase family.
  
     0.709
Dtox_4154
PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein.
  
     0.639
Dtox_2850
Hypothetical protein; KEGG: aba:Acid345_0662 parallel beta-helix repeat protein.
  
     0.627
Dtox_4145
PFAM: O-antigen polymerase; Tetratricopeptide TPR_2 repeat protein; KEGG: dal:Dalk_4888 O-antigen polymerase.
 
     0.624
Dtox_3147
PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein.
  
     0.623
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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