STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_4161PFAM: Peptidase M23; KEGG: vpa:VPA1649 putative TagE protein. (261 aa)    
Predicted Functional Partners:
Dtox_4162
TIGRFAM: stage II sporulation protein D; SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: bha:BH3748 stage II sporulation protein D.
 
   
 0.794
Dtox_2504
PFAM: Peptidase M23; Lytic transglycosylase catalytic; KEGG: cju:C8J_1158 peptidase, M23/M37 family.
  
   
 0.788
Dtox_2389
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: sat:SYN_00304 multimodular transpeptidase- transglycosylase.
  
   
 0.636
Dtox_2820
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: bsu:BSU10110 penicillin-binding protein 2C.
  
     0.623
Dtox_1300
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: baa:BA_0478 transglycosylase.
  
   
 0.616
Dtox_4160
PFAM: S-layer domain protein; KEGG: fimbriae-associated protein.
  
  
 0.560
Dtox_1118
TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: gme:Gmet_0850 stage II sporulation-related protein.
  
   
 0.524
murA-3
UDP-N-acetylglucosamine1- carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
     0.508
Dtox_0717
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: baa:BA_2177 surface presentation of antigens (SPOA) protein.
   
   0.493
Dtox_3765
CheC, inhibitor of MCP methylation; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: bsu:BSU16320 flagellar motor switch protein.
   
   0.493
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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